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3D-Genome Interaction Viewer & database

Easy-to-use database about 3D-genome

About 3DIV

3D genome organization is tightly coupled with gene regulation in various biological processes and diseases. 3D Interaction Viewer and Database (3DIV) is a database providing chromatin interaction visualization in a variety of options from one-to-all chromatin interaction with epigenetic annotation to unique dynamic browsing tools allowing examination of large-scale genomic rearrangement mediated impacts in cancer 3D genome. 3DIV will be the most comprehensive resource to explore gene regulatory effects of both normal and cancer 3D genome.

Hi-C

3DIV provides querying list of significant interacting partner locus, visualization, and comparative analysis of 3D chromatin interaction across about 400 samples.

Capture Hi-C

3DIV provides promoter capture Hi-C (pcHi-C) results across 28 normal human cell/tissue types, a great resource in identifying target genes of disease-associated genetic variants.

Cancer Hi-C

3DIV provides unique visualization and manipulation tools that allows user to generate rearranged 3D genome by selecting listed SVs, creating own SVs, and providing order of rearranged chromosomes.

~ 400

Samples

> 18

Cancer types

2,603

Colon cancer specific Structural Variations

References