Dialog
User can designate cutting region by dragging or precise genomic coordinates
cutStart
Set
cutEnd
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Cancer Hi-C

Choose a sample
Case
Control
Choose a genetic locus
By gene
Gene
By genomic locus
chr1 chr2 chr3 chr4 chr5 chr6 chr7 chr8 chr9 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 chr20 chr21 chr22 chrX chrY
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By predefined SV
Sample Chrom1 Breakpoint1 Chrom2 Breakpoint2 SV type Orientation
By file
Example)
chr19:1-11064109;chr17:7,858,769-83257441
chr20:1-17070762;chr19:14867959-58617616
chr17:1-6643610;chr20:18560020-64444167
Extra tracks
Contact map color palette
Resolution
40Kb 500Kb
Boundary
0Kb 5Mb 10Mb 20Mb
Genes (Enter the genes to be displayed)
Selected region(s)
Sample Region Boundary
Case Control Region Boundary
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