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Search by Cell Line
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Search by Gene neme
(auto-complete)
Boolean logic search
Query Builder
Examples )
To search by BLE : (Boolean Logic Expressions) help
Scenario 1 : Which cell lines come from "Lung adenocarcinoma" and have BRAF muations (BLE)
Scenario 2 : Which cell lines have genes with high expression levels belonging to the top 60% (BLE)
Scenario 3 : Which cell lines come from "Breast" and have BRCA1 or BRCA2 muations (BLE)
Scenario 4 : Which cell lines come from "Lung adenocarcinoma" and have TP53 or EGFR mutations with high expression levels (BLE)
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Boolean Logic Expression
Keywords
KeywordValuesExampleDescription
TERMS: Array of keywords in '[]' TERMS:["adenocarcinoma", "Glioma"] Any combination of tissue, histology and cancer what user want to search
Only one keyword TERMS:"Lung" When user find cell lines by only one keyword, query text does not be needed between parenthesis after TERM keyword
GENES: Array of genes in '[]' TERMS:["TP53", "EGFR"] Any gene(s) which have mutations, expression or copy number variations
Only one gene TERMS:TP53 When there is a gene which user is interested in, just type gene symbol after TERM keyword
CNVTYPE: AMPLICATION CNVTYPE:[AMPLIFICATION] To find cell lines which have amplification copy number variation of genes in the previous GENES keyword, type 'AMPLIFICATION' text
DELETION CNVTYPE:[DELETION] To find cell lines which have deletion copy number variation of genes in the previous GENES keyword, type 'DELETION'
NEUTRAL CNVTYPE:[NEUTRAL] To find cell lines which have neutral copy number variation of genes in the previous GENES keyword, type 'NEUTRAL'
MUTATION: 'Y' MUTATION:[Y] To find cell lines which have mutations of genes in the previous GENES keyword, this keyword must be 'Y'
'N' MUTATION:[N] To find cell lines which does not have mutations of genes in the previous GENES keyword, this keyword must be 'N'
MUTATIONTYPE: IN_FRAME MUTATIONTYPE:[IN_FRAME] To find cell lines which have 'In_frame' mutation of genes in the previous GENES keyword
MISSENSE MUTATIONTYPE:[MISSENSE] To find cell lines which have 'Missense' mutation of genes in the previous GENES keyword
FRAME_SHIFT MUTATIONTYPE:[FRAME_SHIFT] To find cell lines which have 'Frame_shift' mutation of genes in the previous GENES keyword
NONSENSE MUTATIONTYPE:[NONSENSE] To find cell lines which have 'Nonsense' mutation of genes in the previous GENES keyword
SILENT MUTATIONTYPE:[SILENT] To find cell lines which have 'Silent' mutation of genes in the previous GENES keyword
UNKNOWN MUTATIONTYPE:[UNKNOWN] To find cell lines which have 'Unknown' mutation of genes in the previous GENES keyword
EXPRESSION: From N TO N 10TO80 To find cell lines which have from X1 to X2 percentile gene expression level of genes in the previous GENEs keyword
GREATER THAN EQUAL N(Percentile) GE40 To find cell lines which have grater than and equal to X percentile gene expression level of genes in the previous GENEs keyword
LESS THAN EQUAL N(Percentile) LE30 To find cell lines which have less than and equal to X percentile gene expression level of genes in the previous GENEs keyword
GRATER THAN N(Percentile) GT60 To find cell lines which have grater than X percentile gene expression level of genes in the previous GENEs keyword
LESS THAN N(Percentile) LT70 To find cell lines which have less than X percentile gene expression level of genes in the previous GENEs keyword
SOURCETYPE: CCLE CNVTYPE:[CCLE] To find cell lines from CCLE DB source
COSMIC CNVTYPE:[COSMIC] To find cell lines from COSMIC DB source
NCI60 CNVTYPE:[NCI60] TO find cell lines from NCI60 DB source
Operators
OpratorDescription
AND | and Returns cell lines existing between two query terms
OR | or Returns cell lines existing in either of two query terms
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Easy builder for boolean logic expression
Filters
Keyword Values Action
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Example
To apply filter combination
Operator Keyword Values Action
Boolean logic expressions
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